SNP Profiles of EQX /O [CHA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CT	AG
1._EQX_/O_[CHA]	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CT	AG
2._EQX_/O_[CHA]	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CT	AG
3._EQX_/O_[CHA]	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CT	AG
4._GC-07-077-4-21	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CT	AG
5._GC-07-077-4-21	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CT	AG
6._GC-07-087-5-22	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CT	AG
7._GC-07-087-5-22	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CT	AG
8._EQX_/O_[CHA]	CT	AG	GG	CC	TT	AC	CC	TT	CC	CT	AA	AA	CC	AG
9._GC-07-087-5-22	CT	AG	GG	CC	TT	AC	CC	TT	CC	CT	AA	AA	CC	AG
10._EQX_/O_[CHA]	CC	GG	GG	CC	TT	AC	CC	TT	CC	CC	AA	AG	CC	_
11._GC-07-077-4-21	CC	GG	GG	CC	TT	AC	CC	TT	CC	CC	AA	AG	CC	_
12._RUQ_138	_	AG	-	TT	_	_	_	TT	_	_	_	_	CC	AA
13._RUQ_138	CC	AG	CC	TT	TT	AC	CT	TT	CT	CC	AA	AG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CC	GT	GG	TT	AC	CG	TT	TT	CC
1._EQX_/O_[CHA]	TT	AA	GG	TT	CC	CC	GT	GG	TT	AC	CG	TT	TT	CC
2._EQX_/O_[CHA]	TT	AA	GG	TT	CC	CC	GT	GG	TT	AC	CG	TT	TT	CC
3._EQX_/O_[CHA]	TT	AA	GG	TT	CC	CC	GT	GG	TT	AC	CG	TT	TT	CC
4._GC-07-077-4-21	TT	AA	GG	TT	CC	CC	GT	GG	TT	AC	CG	TT	TT	CC
5._GC-07-077-4-21	TT	AA	GG	TT	CC	CC	GT	GG	TT	AC	CG	TT	TT	CC
6._GC-07-087-5-22	TT	AA	GG	TT	CC	CC	GT	GG	TT	AC	CG	TT	TT	CC
7._GC-07-087-5-22	TT	AA	GG	TT	CC	CC	GT	GG	TT	AC	CG	TT	TT	CC
8._EQX_/O_[CHA]	CT	AA	GG	CT	CC	GG	GG	AG	TT	AC	CC	TT	CT	AC
9._GC-07-087-5-22	CT	AA	GG	CT	CC	GG	GG	AG	TT	AC	CC	TT	CT	AC
10._EQX_/O_[CHA]	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
11._GC-07-077-4-21	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
12._RUQ_138	_	_	_	_	CT	CG	GT	_	CT	AC	CG	GT	CT	AC
13._RUQ_138	TT	AA	GG	TT	CT	CG	GT	AA	CT	AC	GG	GT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	GG	CC	AA	CC	GT	AC	TT	GG	X_X	X_X
1._EQX_/O_[CHA]	AG	GG	AA	CC	GG	CC	AA	CC	GT	AC	TT	GG	X_X	X_X
2._EQX_/O_[CHA]	AG	GG	AA	CC	GG	CC	AA	CC	GT	AC	TT	GG	X_X	X_X
3._EQX_/O_[CHA]	AG	GG	AA	CC	GG	CC	AA	CC	GT	AC	TT	GG	X_X	X_X
4._GC-07-077-4-21	AG	GG	AA	CC	GG	CC	AA	CC	GT	AC	TT	GG	X_X	X_X
5._GC-07-077-4-21	AG	GG	AA	CC	GG	CC	AA	CC	GT	AC	TT	GG	X_X	X_X
6._GC-07-087-5-22	AG	GG	AA	CC	GG	CC	AA	CC	GT	AC	TT	GG	X_X	X_X
7._GC-07-087-5-22	AG	GG	AA	CC	GG	CC	AA	CC	GT	AC	TT	GG	X_X	X_X
8._EQX_/O_[CHA]	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
9._GC-07-087-5-22	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
10._EQX_/O_[CHA]	AA	GG	AA	CC	AG	CC	CC	CC	GG	CC	AT	GG	X_X	X_X
11._GC-07-077-4-21	AA	GG	AA	CC	AG	CC	CC	CC	GG	CC	AT	GG	X_X	X_X
12._RUQ_138	AG	_	AT	CC	AA	CG	CC	TT	GG	AC	_	_	X_X	X_X
13._RUQ_138	AG	AG	AT	CC	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X

Input profile: EQX_/O_[CHA]

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Mars Center for Cocoa Science, Brazil

Location: 7421 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._EQX_/O_[CHA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7522 4 > FP

Dapeng Zhang, 2016

2._EQX_/O_[CHA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7522 2 > FP

Dapeng Zhang, 2016

3._EQX_/O_[CHA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7421 3

Dapeng Zhang, 2016

4._EQX_/O_[CHA] GC-07-077-4-21

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._EQX_/O_[CHA] GC-07-077-4-21

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._EQX_/O_[CHA] GC-07-087-5-22

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

7._EQX_/O_[CHA] GC-07-087-5-22

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

8._EQX_/O_[CHA]

77.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7522 1 > FP

Dapeng Zhang, 2016

9._EQX_/O_[CHA] GC-07-087-5-22

77.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._EQX_/O_[CHA]

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7421 2

Dapeng Zhang, 2016

11._EQX_/O_[CHA] GC-07-077-4-21

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._EQX_/O_[CHA] RUQ_138

58.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._EQX_/O_[CHA] RUQ_138

56.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25